One thing I can tell you, is that the Hebrew will go in the correct order if you set the display to Separate Verses instead of Paragraphs. Click the gear icon > Set Text Pane Display > Separate Verses. Then you will see something that looks quite strange, each verse reads RTL, but each is left justified.
UHB, Separate Verses.png 72.25KB
Yes, I agree, there has to be a better way. There were severe limitations with RTL texts and User Tools when I posted the UHB in Nov. 2015 (see https://www.accordan...boustrophedon),and these still remain. And, as you well know, there are still severe limitations with RTL in the Notes and in the display of Live Click results.
The only real advantage for me of the UHB is that I can change the font to a Paleo-Hebrew one if I want. But, I've long since made my own Unicode Hebrew Bibles for personal use, and don't use the UHB on Accordance myself. For a question like yours, I just copy and paste into Word and get word counts that way.
Thank you for again pointing out the limitations with RTL texts. Honestly, 25 years, and still not offering RTL support in Notes, Live Click, and User Tools. Very, very frustrating, and almost beyond belief.